cloudFISH: Engineer position

Organization: CloudFISH consortium / France BioImaging RIAvailable from: October 1, 2021Position Information:CloudFISH is a consortium grouping the labs of Marcelo Nollmann (CNRS Montpellier), Florian Mueller (Zimmer team, Pasteur Institute), and Thomas Walter (Mines Paristech). Our groups develop imaging-based technologies to visualize DNA and RNA with high spatial resolution, aiming to understand transcriptional regulation and genome organization. Our past developments include FISH-quant, a software package for the sub-cellular detection of RNAs from single molecule FISH images (Mueller, 2013), Hi-M, a multiplexed imaging-based method to trace chromatin architecture and transcriptional status in single cells (Cardozo, 2019), and deep learning-based approaches to identify mRNA localization patterns (Dubois, 2019). The aim of CloudFISH will be to build and deploy user-friendly, scalable tools to analyze multiplexed RNA-FISH and DNA-FISH data using deep learning approaches with remote computing servers.We are looking for highly motivated candidates to fill a 2-year France BioImaging-funded engineer position to participate in the development of image analysis software within the CloudFISH project. The candidate should have expertise in Python programming. Experience with web programming, image analysis, deep learning frameworks, and deployment of server applications with containers and Kubernetes will be advantageous but not compulsory. Candidates are expected to express a strong interest in working at the interface between informatics, physics, and biology.Interested applicants should apply at this link. Please include a CV with references and your Github/Gitlab handle. #J-18808-Ljbffr